Here she is, just not running right

[Chamberpains]

What does it run like in the higher rpm's? Have you taken it for any kind of test drive?
Have pulled off and checked all 4 timing and metering actuators and checked them?
Search for and read...
Checking your Metering and Fueling Actuators by Rawze...
03-01-2016, (Subject: Checking your Metering and Fueling Actuators by Rawze... )

Also you may be getting air in the fuel system.

I also notice you have all your piping for your EGR. Has it been blocked off properly so the EGR valve can't come open and allow straight exhaust back in the system? Unilevers will cure your ECM programming but you need to make sure the mechanical side of things are blocked off. Make sure that EGR valve can't open at all or allow any gas by it.